rs47744091 SNP Detail

Summary

• ID
  rs47744091
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34418273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTTTT TTTTTTTTTT TTGGTAAGTT TAACTGGTCA
  GGAAATAAAC TGAAAAACAG CCGGAACTTG CAGACGGCCC CTGGCTTTGT TATAAAACAG
  C
  ATACACAAAA CTTTCCAAAG CAGTATTGCT GATAAAATAG CTAATTTCTT CAGGTGAAGA
  GGCAGTTTTT CAACTCTTCC ATTCATTTAA GAGGCACCA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149088234	ENSMUSSNP5570858	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322573963	CHEV_8_35038717	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47744091					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34418273 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530006C21Rik	RIKEN cDNA 9530006C21 gene			within coordinates
Cpgi20240	CpG island 20240			858 bp proximal
Rbpms	RNA binding protein gene with multiple splicing			Intron
				Noncoding-Transcript-Variant
Rr661901	regulatory region 661901			430 bp distal
Rr661902	regulatory region 661902			within coordinates
Rr661903	regulatory region 661903			1550 bp proximal
Tssr80880	transcription start site region 80880			771 bp upstream
Tssr80881	transcription start site region 80881			1553 bp downstream
Tssr80882	transcription start site region 80882			1688 bp downstream
Tssr80883	transcription start site region 80883			1733 bp downstream