rs47745476 SNP Detail

Summary

• ID
  rs47745476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29979981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGGCCAA TCACAAAGCT TCCGGGTAGG CTCATTGCCC
  AATGGGAGAT AAGAGGCGGA GCTAAAGGAA GGTGGGGCCA GGGCCTGTCT ATTTCACTGC
  Y
  TACTGAGTCT GGCTGGGTTT CTCTACTAAC CTGTGCTTTC TCTGTTCATA GACACACAGC
  TTTTAACTTT GATGGAGCTC ATCCTGTCTT TTGCAACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148672307	ENSMUSSNP2038994	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47745476					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29979981 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	477 bp upstream
Cpgi18786	CpG island 18786	within coordinates
Rr400235	regulatory region 400235	within coordinates
Rr644765	regulatory region 644765	447 bp distal
Rr644766	regulatory region 644766	492 bp distal
Rr644767	regulatory region 644767	within coordinates
Rr644768	regulatory region 644768	342 bp proximal
Rr644769	regulatory region 644769	1289 bp proximal
Rr644770	regulatory region 644770	1680 bp proximal
Tssr65667	transcription start site region 65667	414 bp downstream
Tssr65668	transcription start site region 65668	368 bp downstream
Tssr65669	transcription start site region 65669	within coordinates
Tssr71721	transcription start site region 71721	132 bp upstream
Wdr62	WD repeat domain 62	137 bp upstream