rs47745889 SNP Detail

Summary

• ID
  rs47745889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39597146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG AGGATGCTAC CATATGCAGA
  R
  CTATACTTCG GAATTACAGA TTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148969070	ENSMUSSNP1216507	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319695773	CHEV_1_39614910	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47745889					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39597146 () rs orientation: forward

Symbol	Name	Function Class
Rnf149	ring finger protein 149	within coordinates
Rr409899	regulatory region 409899	1695 bp distal
Rr409900	regulatory region 409900	1008 bp proximal
Tssr11387	transcription start site region 11387	236 bp upstream
Tssr11388	transcription start site region 11388	236 bp downstream
Tssr11389	transcription start site region 11389	297 bp downstream
Tssr11390	transcription start site region 11390	866 bp downstream
Tssr11391	transcription start site region 11391	896 bp downstream