rs47746578 SNP Detail

Summary

• ID
  rs47746578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85529587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC TTGAAATGAC CGCCCTGCTT
  Y
  CATGGAATTT CCCCTGCTCT GCGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148269110	ENSMUSSNP4405128	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss325042415	CHEV_15_85475816	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47746578					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85529587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7486	CpG island 7486	589 bp proximal
D130051D11Rik	RIKEN cDNA D130051D11 gene	within coordinates
Gm62280	predicted gene, 62280	within coordinates
Lncppara	long noncoding RNA near Ppara	715 bp upstream
Rr507251	regulatory region 507251	within coordinates
Rr507252	regulatory region 507252	344 bp proximal
Rr507253	regulatory region 507253	1065 bp proximal
Tssr132525	transcription start site region 132525	303 bp upstream
Tssr132526	transcription start site region 132526	693 bp upstream