rs47749632 SNP Detail

Summary

• ID
  rs47749632
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84511100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGTGCG TACACACAAC
  TATTTCTTTT TCTCTTTGCA GGTGCTGCAA ACCAGGAAGG GGAAGTGTGT GGTTTAAGTT
  GCATATCCCT TATCCTCTGG CTGCTGGAGG CTTGCTGAAG GCTGTATGCT GTTAATGCTA
  ATTGTGATAG GGGTTTTGGC CTCTGACTGA CTCCTACCTG TTAGCATTAA CAGGACACAA
  S
  GCCTGTTACT AGCACTCACA TGGAACAAAT GGCCACCGTG GGAGGATGAC AAGTCCAAGA
  GTCACCCTGC TGGATGAACG TAGATGTCAG ACTCTATCAT TTAATGTGCT AGTCATAACC
  TGGTTACTAG GATAGTCCAC TGTAAGTGTT ACGATAAATG TCATTTAAAA GATAGATCAG
  CAGTATCCTA AACAACATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss60500112	NES16522455	PERLEGEN	MM_PANEL2	f	SNP	G	G	C		G	G
ss325261452	CHEV_16_84714457	CHEVERUD	SCREENING_POP	f	SNP				G			C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs47749632					SNP	G	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500112	NES16522455	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84511100 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	8 bp downstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	877 bp downstream
Rr518521	regulatory region 518521	565 bp distal
Rr518522	regulatory region 518522	within coordinates
Rr518523	regulatory region 518523	1962 bp proximal
Tssr139173	transcription start site region 139173	6 bp downstream
Tssr139174	transcription start site region 139174	773 bp upstream
Tssr139175	transcription start site region 139175	861 bp upstream
Tssr139176	transcription start site region 139176	1397 bp upstream