rs47749864 SNP Detail

Summary

• ID
  rs47749864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29581758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGCACAT GTACCACGTT
  CAAAAAGGCA GTTATATCTG AGGAAATTAT ATTTGCTAAT AAAATAATAT TTTAAATGTC
  GTATGTCTAA GCCAGACATC CCATGTCAAC CTGTAAGACA GTCTAATTCT ATGGAGACCT
  GTTGTTTCAA AAATGCATAT TATCTCTTCT AACACAGTTT ACTTGCTATG CATTTCAGTG
  R
  CTAGATTTTA AATTACAAAC AATAACGTAA GGTTTTAGTC ACTCTTGTGC TTTAAAATAG
  ATCCACTTTT TGGAACAAGA GGAAATAATG AGGCTCCCTC GGTAGGGACC TCTCTGCCCT
  GAACTTGAAC TCAACTGCTT GCCCATTTTC TTCAAGGGCC ATGTTTTCTA ATCAATAACT
  AGTTTTTCAA ATGCATCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61585713	NES17530651	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47749864					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61585713	NES17530651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29581758 () rs orientation: forward

Symbol	Name	Function Class
Gm20208	predicted gene, 20208	649 bp upstream
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464423	regulatory region 464423	655 bp distal
Rr464424	regulatory region 464424	550 bp distal
Rr464425	regulatory region 464425	1141 bp proximal
Tssr113063	transcription start site region 113063	1521 bp upstream
Tssr113064	transcription start site region 113064	1533 bp upstream
Tssr113065	transcription start site region 113065	1592 bp upstream
Tssr113066	transcription start site region 113066	1669 bp upstream
Tssr113067	transcription start site region 113067	1692 bp upstream
Tssr113068	transcription start site region 113068	1718 bp upstream
Tssr116026	transcription start site region 116026	616 bp upstream