rs47749918 SNP Detail

Summary

• ID
  rs47749918
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34152918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATCAGTGA GTTCCTTTGA AATATTGAGA GATTTAGCAT
  CAGTGTCCAG GAAGGTCGCC TCTGGGACCC AGATAAGTCC CACTCCCCCG CCCCCGTGTC
  W
  CGAAAACAGT GAGGAAAATC CTCTCTAGCC TGACCCTCTC CTTCTCAGTC CCCTTGTGCT
  GACAACCCTG GCTGTTTGAT TACCCTACTC CCAGGTTCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148215560	ENSMUSSNP3206128	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47749918					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34152918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15746	CpG island 15746	within coordinates
Nat8l	N-acetyltransferase 8-like	410 bp upstream
Rr609648	regulatory region 609648	721 bp distal
Rr609649	regulatory region 609649	within coordinates
Tssr1458	transcription start site region 1458	1209 bp upstream
Tssr45846	transcription start site region 45846	435 bp upstream
Tssr45847	transcription start site region 45847	474 bp upstream
Tssr45848	transcription start site region 45848	520 bp upstream
Tssr45849	transcription start site region 45849	545 bp upstream
Tssr45850	transcription start site region 45850	836 bp upstream
Tssr45851	transcription start site region 45851	1011 bp upstream
Tssr45852	transcription start site region 45852	1035 bp upstream
Tssr45853	transcription start site region 45853	1065 bp upstream
Tssr45854	transcription start site region 45854	1124 bp upstream
Tssr45855	transcription start site region 45855	1157 bp upstream
Tssr45856	transcription start site region 45856	1174 bp upstream
Tssr45857	transcription start site region 45857	1196 bp upstream
Tssr50625	transcription start site region 50625	962 bp downstream