rs47749925 SNP Detail

Summary

• ID
  rs47749925
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105074158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGACTTGCA AATTGGTGGT CCGACCTGGG TATTGGGGCG
  AAAGACTAAT CGAACCATCT AGTAGCTGGT TCCCTCTGAA GTTTCCCTCA GGATAGCTGG
  T
  GCTCTCGCTC TTCCCGACAC ACGCAGTTTT ATCCGGTAAA GCGAATGATT AGAGGTCTTG
  GGGCCGAAAG GATCTCAACC TATTCTCAAA CTTTAAATG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147491348	ENSMUSSNP323123	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47749925					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105074158 () rs orientation: forward

Symbol	Name	Function Class
Rr212535	regulatory region 212535	43 bp proximal
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr95614	transcription start site region 95614	140 bp downstream
Tssr95615	transcription start site region 95615	191 bp upstream