rs47752660 SNP Detail

Summary

• ID
  rs47752660
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62321016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAT GGGAGGTGGA GGCAGGAGGA
  T
  TGGGAGGCCA AGAATAGCCT GGGTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136549566	ENSMUSSNP3672298	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322982305	CHEV_9_62261541	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47752660					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62321016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21896	CpG island 21896	1713 bp proximal
Gm40523	predicted gene, 40523	603 bp downstream
Rr1154	regulatory region 1154	915 bp upstream
Rr196313	regulatory region 196313	216 bp distal
Rr196314	regulatory region 196314	185 bp proximal
Rr196315	regulatory region 196315	1985 bp proximal
Rr201157	regulatory region 201157	1215 bp distal