rs47753294 SNP Detail

Summary

• ID
  rs47753294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99242329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATATTACC TGTCAGGGCT
  CTGCTCCTCA CCCGAGTAGA ATGTTGTCCC TTCCCGCCAC TGTGCAGCCC TGCAGGAACA
  GGTCCTGGTT AGACTGCCAA GCTCCCGGGG AGAGGTCATC CCTTTGTCTT TCGCGCTCAC
  AGGCCCACAC CTCCTTACCA CCTGACTCAA TGTGTTTGCA CAGAGTGTGG AAGATGCACA
  Y
  GTGAGGGAGA GTTGCAAAGA CAGTGGCTGG CTGTGAGTGC AATGTTCAAT GTCCAACGTG
  AGACCCGTGA CATCCTTTGG GACTTTATTG CCCCAGCGGG ATTGTTCTCT CTGTTCCCAG
  ACACACCAAG TTTGTTCAAC ATCAAAGCTT TCAGGTTCCT CTCTGCAGAA TGGCCTCCTC
  CTTAGTCTTC CATAGAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61444645	NES16824609	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47753294					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61444645	NES16824609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99242329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1571 bp distal
Esyt3	extended synaptotagmin-like protein 3	1719 bp upstream
Rr198328	regulatory region 198328	472 bp proximal
Rr206935	regulatory region 206935	1528 bp distal
Tssr91051	transcription start site region 91051	1724 bp upstream