rs47753401 SNP Detail

Summary

• ID
  rs47753401
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21634710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAACTGT ACTTGGGTCA
  GAAATCTATG TGCCCATTCC TAGACAGGAA AGCAAACTTG CTGCAAGAAG TGTAGGGGTC
  GGGGGTGGGA GGGGGCTTCG CATACTTCTG TTTTGCTTTG GAGGTGGAAA GGAAAGCGTC
  AGAAGGCGAC CCAGGGTGTG GAAGGGCGTG GGTCGTCCCT TGAACACTCA AACAGCAACG
  S
  GGGCGGCTAA GTGTCCGGGA AGCGGTGAAA TTCTGTGGGA GGAATTTGAG GAACTTCCCA
  CTGCTGCGGG AGCTTCAGGG GTTAAAAGAG ACGATGTCAC ATCGGCCGTT CCAAGCTCCT
  CCCCGCTCAG TGAGGTGAAG ATTTTTGAAA ATCACCCCAT TGCAGACTCC TCCCCCGCCT
  GGAAACCTCG CCCCTAGTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136225839	ENSMUSSNP3564263	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47753401					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21634710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21450	CpG island 21450	within coordinates
Gm26511	predicted gene, 26511	within coordinates
Ldlr	low density lipoprotein receptor	162 bp upstream
Rr206061	regulatory region 206061	within coordinates
Rr401274	regulatory region 401274	within coordinates
Rr401275	regulatory region 401275	779 bp upstream
Tssr84044	transcription start site region 84044	190 bp upstream
Tssr84045	transcription start site region 84045	210 bp upstream