rs47753616 SNP Detail

Summary

• ID
  rs47753616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76846278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGCGACA CCAACGCCCG
  GCTTGGGATC TTCTTTTCTG TTCCTTCCTG GCTGGCAGCT GTCACCCTGC TCTGGGCATT
  GTAGATGAAC CTGTGCTTCC CTTCGATTGT GGAGGTCAAA GGACAGAGGG ACTGTTTGGA
  TCCTTTACTG TGTCTAATTA CTCTTAGCAC TGCCCGCATT GTGTGGGTCA GTACATCATC
  Y
  CTGTTCATAG TTGTATAGCA TTTCAGTGTC TGAGTGAGCC CAGCCTACGT GTTTATTTAC
  TTGGGGAGAG TTGGGGGTCT AGACTTTCAC ATCATAACGC CAATCAGATC TTAACTCTTG
  CTTCTGTCGA GAAAACAGGA AAGCAATGGC TGGCCCACAG AAGAGGTTCA TCTTTATTTT
  ATTTTCTGTA TATGGGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376432	NES15271979	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47753616					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376432	NES15271979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76846278 () rs orientation: forward

Symbol	Name	Function Class
Gm3137	predicted gene, 3137	1057 bp downstream
Gm10787	predicted gene 10787	1551 bp upstream
Gm35721	predicted gene, 35721	1821 bp upstream
Rr384954	regulatory region 384954	1900 bp downstream
Rr434364	regulatory region 434364	1550 bp distal
Rr434365	regulatory region 434365	1855 bp proximal
Tssr94202	transcription start site region 94202	1540 bp upstream