rs47754857 SNP Detail

Summary

• ID
  rs47754857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80078570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGTCAC CGGTTTGAGG
  CAGAGAAACG CATGGCTTGA GAACTGCAGA TGCCAGGCGG CCGCCAGCCA GCTGTGTGTC
  AGGACCTCTG TCCTCCAGAG GGTAGGGAAG AAGGTGGCAC ACGGTGTCTG GCGGCAGACA
  ATACTCCAGC CATCAGCTGC CATGGAGGGA AGGATGATGA AGGTCTCCCA CAGTCTGTCC
  R
  CTCCTGCCTG GTTACAGGGC TTAGCTGCAT CCTTCTGTAT CCTTCACAGA CGAGCTCTCT
  TCAGCTCCCT CAGCTGTCCT CTGTCCCTCT GTGCTGAGCT CCCTAAGGGT TTTTGTGTTA
  AAAAAAAATT AATAATCTGT TTTTTCTTTC CCAAGTCCTG CTCCCAAAAT GACTCTGAGA
  CTAAATATTT ACTAATAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569426	NES17022418	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47754857					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569426	NES17022418	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80078570 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505909	regulatory region 505909	1357 bp distal
Rr505910	regulatory region 505910	812 bp distal
Tssr4660	transcription start site region 4660	1237 bp downstream
Tssr132187	transcription start site region 132187	1355 bp downstream
Tssr132188	transcription start site region 132188	1299 bp downstream
Tssr132189	transcription start site region 132189	1284 bp downstream