rs47756291 SNP Detail

Summary

• ID
  rs47756291
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:15803452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACAGTTT TTACAAACTG
  AAAGACTTAG GTGTGGGAGG ACAGAGTATG TCTTAATTAT ATCATGATAC ATTATCAAGT
  ATTATCAGGC TTGAAGGCCA CAGAGGATGG ACACTCAGTT ATAATGACCT TTGGACTTCA
  CCTTCTGTTT CTAACCAAAA TGGAGAGTAC AGGCAGTGCC TTGCACTATC TGTACTGTGC
  W
  CTCAGTTGAA CACACGCCCT AAATCCCCAG GCGTTTGAAT TTCTAATTGG ACAGAAGTGC
  CCCATAACTT GCTGAGCTAT TAAAACCAAG ATTAACGGTT TTTAACAACT TCATTTCTGA
  AGGACTTGAC TGCTCAGCTA ATACTGTCCA GTCTCAGCCC ACTTCATCCT AAGGTAGGTT
  ATAGTATCCA CATCATAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63665016	NES17054762	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47756291					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63665016	NES17054762	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:15803452 () rs orientation: forward

Symbol	Name	Function Class
Rr404696	regulatory region 404696	644 bp downstream
Rr512189	regulatory region 512189	within coordinates
Spidr	scaffolding protein involved in DNA repair	within coordinates
Tssr137231	transcription start site region 137231	1076 bp downstream