rs47756412 SNP Detail

Summary

• ID
  rs47756412
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44435666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA TATGTGTCAT GAAAGAAGTT
  W
  CTTTGCTTCT CTCCTTGGAA TGTAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136396567	ENSMUSSNP5464029	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322941027	CHEV_9_44332452	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47756412					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44435666 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	within coordinates
Rr200337	regulatory region 200337	1066 bp distal
Rr203858	regulatory region 203858	within coordinates
Rr206318	regulatory region 206318	1334 bp proximal
Rr209144	regulatory region 209144	1644 bp distal
Tssr89167	transcription start site region 89167	1599 bp downstream