rs47757493 SNP Detail

Summary

• ID
  rs47757493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91176228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACCAGT AGGCTCTTGG
  TAAGTCTTAG GTGAACACAT GAGGCTCCCT TATGAAATGG ACCTAGAAGT GACTCATCTC
  TTTGCAATGT TGAGAGTCAG GCGTATTGGT TCAGCTGTTC CAGCTGTATC TGCCTCTTCA
  AGCCCTTATC TTTTCTCACC AGAACTTTGC ACAAACTCAT GCAGTACTTG CCCAATAACA
  Y
  TGGTTCTGAA CACCTGCCAT GGGTCCAAAG AAGAGCGGGG AGAGCAAGAG GGGGTGCCGG
  GGTGAGGAGC CGTAAGAAAG TGCTGTTTAA GCTTAGGAAA ACAAGACAAG CGTTAGCTGA
  GCAAAGGTGT TTTCCTGAAA GAATGAGGCA GCTTGTCATA AAGAGTTCAC TTGAGTACTA
  TAATGGCTAT TCCTGGTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60767819	NES16403399	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47757493					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60767819	NES16403399	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91176228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	1390 bp proximal
Rr366958	regulatory region 366958	1439 bp upstream
Rr415585	regulatory region 415585	565 bp distal
Rr415586	regulatory region 415586	within coordinates
Rr415587	regulatory region 415587	1315 bp proximal
Tssr8065	transcription start site region 8065	1687 bp upstream
Tssr8066	transcription start site region 8066	1791 bp upstream
Tssr8067	transcription start site region 8067	1805 bp upstream
Tssr8068	transcription start site region 8068	1976 bp upstream
Tssr12938	transcription start site region 12938	1534 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	1184 bp upstream