rs47757566 SNP Detail

Summary

• ID
  rs47757566
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13010552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGAGCA TGATGCAGTA
  AATAGTAGAT TAAGGCAGAA ACTAGAACTC TTAAAGGAAT TCCAGCAGCT GACCATTTGC
  TACATAGAAG CATGGTTTTG TCATGTCCTA TATTCAAGGA AGACTTCCTT AGTCCCAAGT
  GGCTCTCTTT TAACTATCTA CCAACCCTTT GGTGGTACTA CCCATTTGCC AGGAACTACC
  K
  ACAAACTTAC TCTTAACACG AATCTTCTGG TCAGTCAGAA AGTTCCAGAT GGGTAGATTT
  TAATCTAAAA TAACCCCAGC TCCCAGAACA GGATCTGGTT CTACACTGAC TGGAGATATC
  TTCCTTTCTT ATGGCTTTCT TCACAGTTCA GTCTTCCAGG CTGCTTTTTG TAGATGTGCA
  AGACCTGGCC CACCAACTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60970727	NES16158008	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47757566					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970727	NES16158008	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13010552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	1691 bp proximal
Lig1	ligase I, DNA, ATP-dependent	687 bp upstream
Rr642459	regulatory region 642459	1073 bp proximal
Rr642460	regulatory region 642460	1508 bp proximal
Rr642461	regulatory region 642461	1800 bp proximal
Tssr64537	transcription start site region 64537	529 bp upstream
Tssr64538	transcription start site region 64538	628 bp upstream
Tssr64539	transcription start site region 64539	1918 bp upstream
Zswim9	zinc finger SWIM-type containing 9	within coordinates