rs47757675 SNP Detail

Summary

• ID
  rs47757675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26729990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC CCAATAATGG CTGAAAGTGC
  R
  TCCTTCTCAC TGTCTACTCC GTAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145404953	ENSMUSSNP2215552	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325342196	CHEV_17_26647961	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47757675					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26729990 () rs orientation: forward

Symbol	Name	Function Class
Gm56886	predicted gene, 56886	1023 bp downstream
Rr392454	regulatory region 392454	within coordinates
Rr405113	regulatory region 405113	1911 bp downstream
Rr406958	regulatory region 406958	326 bp distal
Rr523862	regulatory region 523862	647 bp distal
Rr523863	regulatory region 523863	730 bp proximal
Tssr5045	transcription start site region 5045	1548 bp upstream
Tssr5046	transcription start site region 5046	1495 bp upstream
Tssr5047	transcription start site region 5047	1484 bp upstream
Tssr143235	transcription start site region 143235	1308 bp downstream
Tssr143236	transcription start site region 143236	1275 bp downstream
Tssr143237	transcription start site region 143237	1711 bp upstream
Tssr146956	transcription start site region 146956	1517 bp upstream
Tssr146957	transcription start site region 146957	1447 bp upstream