rs47758325 SNP Detail

Summary

• ID
  rs47758325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90492951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCCGATCT GGGCAGTCAT CGGGCTCTCA TTTCTGACAC
  TCACCTCCTA TTTCCCCTAT CCTAGACTAG GCGTTGAAAC AGGTTCCCAG TATCTGGCTT
  Y
  CCGTTCAGTT CACCTAGGCT TCTCAGCAGG GACTGTCCAG GAAACCCCTT TTGTGTGAAG
  CAGGTGTGGG TGTGGGAAGG CTCTTTGGAG ATGAATCACC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424333	NES15923770	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47758325					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424333	NES15923770	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90492951 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13467	CpG island 13467	1301 bp proximal
Rr854	regulatory region 854	within coordinates
Rr69094	regulatory region 69094	1551 bp distal
Rr69095	regulatory region 69095	within coordinates
Rr69096	regulatory region 69096	1450 bp proximal
Rr81998	regulatory region 81998	within coordinates
Rr367471	regulatory region 367471	within coordinates
S100a3	S100 calcium binding protein A3	within coordinates
Tssr945	transcription start site region 945	1631 bp upstream
Tssr30230	transcription start site region 30230	1611 bp upstream