rs47758624 SNP Detail

Summary

• ID
  rs47758624
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56281769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAGCTTG TCCCTAGGGG
  AGGCAGAAAT GGCTTTCTAG GACCTGAGAA AATGGCAGAC TGAACTGTAC CACTCCCTAA
  AGCTGGCCCA CGTAGTAGAA AGTAAGCCAG TAAGGAAGTT ATCATATGTG AATTTCCAGA
  CCAATCTCAG TGTGATACAG TGTGAGCTCT CCCTTCCTGG TGAAAACTAT GACCTAGCTC
  K
  TAGCAAAATG AGAAAGAGGG AAAGTTTAAA ATCTCGGGAG ACTCCTCATC CTTAAGGGGA
  AAAAATCCCC ACAAGTTGAA AAGGTTGATC GAGTCAGAGG TTGTGTGTAA GCCCAGTTGC
  TGTTGCTCAA TTGGTCAATT GTGGACAAGC TGTAGTAACT CCAGTAGCGA GTATGAGGGT
  GTCCATTTCA GAACTAACCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61810726	NES17738825	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47758624					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61810726	NES17738825	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56281769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5695	CpG island 5695	655 bp proximal
Macroh2a1	macroH2A.1 histone	within coordinates
Tssr4083	transcription start site region 4083	607 bp downstream
Tssr122739	transcription start site region 122739	1449 bp downstream
Tssr122740	transcription start site region 122740	1471 bp downstream
Tssr122741	transcription start site region 122741	1516 bp downstream
Tssr122742	transcription start site region 122742	1562 bp downstream
Tssr122743	transcription start site region 122743	1673 bp downstream
Tssr122744	transcription start site region 122744	1700 bp downstream
Tssr122745	transcription start site region 122745	1720 bp downstream
Tssr122746	transcription start site region 122746	1828 bp downstream
Tssr122747	transcription start site region 122747	1881 bp downstream
Tssr122748	transcription start site region 122748	1944 bp downstream
Tssr122749	transcription start site region 122749	1992 bp downstream