rs47758750 SNP Detail

Summary

• ID
  rs47758750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108533156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTCTCC CCCAAAGAGA
  ATGCAACCCT TTGCTATTTA GTTCACTTAT ATACCCTAGC ATATAAGAGA GAGTCTGGTG
  CATATTAAGC ATTTAAATTG TTGAATGAAT ATGCCTCCCT AATGATGCCT TATGAAGCCA
  TCACAAATAA AGCACTATTG GTCAGGCATG ATGATTCCTG CCTATAGTCC TAGCATTCGG
  R
  AAGCAGAGGC AGGAAAGTTG AGGTAAGTTC CAGGCCAACC TAACCTATAT GGCTAGGCGT
  GGAATGCAAA GTAGATCCTG AGTCCAAATT TTAATTCATT GATTAATAAG TTAAATGGAT
  GTAACAGTGA ATCCCCTGTA AGACTGATAT TTAATATCCA TTTAAGTCTT AAACAATTGC
  GACCTTTACA CTACTCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145637772	ENSMUSSNP3379734	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322388630	CHEV_7_116077463	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47758750					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108533156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	317 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	1015 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	466 bp upstream
Rr400539	regulatory region 400539	208 bp upstream
Rr652951	regulatory region 652951	1246 bp distal
Rr652952	regulatory region 652952	within coordinates
Rr652953	regulatory region 652953	198 bp proximal
Tssr68456	transcription start site region 68456	456 bp upstream
Tssr68457	transcription start site region 68457	568 bp upstream