rs47761113 SNP Detail

Summary

• ID
  rs47761113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27208946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TGGAGTGTGG AGTCATAGAC
  Y
  GGACCCATGA GGAATATCAG CTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52338307	NES15368979	PERLEGEN	MM_PANEL2	f	SNP			C		T	C	C
ss137459620	ENSMUSSNP4135235	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47761113					SNP	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52338307	NES15368979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27208946 () rs orientation: forward

Symbol	Name	Function Class
Silc1	sciatic injury induced lincRNA upregulator of SOX11	within coordinates
Tssr115957	transcription start site region 115957	1500 bp downstream
Tssr115958	transcription start site region 115958	1530 bp downstream
Tssr115959	transcription start site region 115959	1551 bp downstream