rs47761529 SNP Detail

Summary

• ID
  rs47761529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATATTT GTTATTTAAC
  TATCATTTTG GGAGATGGAA ATTATAATCT CCATTTTATC AATGAGAAAA CCCATTTGCC
  TACATCATCA GATGGTGGGA CATTACTGGA TTTTTATGCT GTTATGCAGA TCTATAGATT
  TAAACTCATA AAGGGGCATC ATGGTGAGTA CTGCTGGCCT GGCATATGTG CTGCCTCTGT
  Y
  CTTCTACCTT ACACCAATAT TACTTTTACT GCTCTGCCAG AGTTTGTTTT CCTGAGGCAT
  CCTTCATGTA CAGTAAGCCA CATCTTAGGT TTTAGGGCAG TCAAGCCCCT AAATTCATAG
  CTGCTGCTTG ATTTCAATGA AGACAAATAG TGAAAACCAA CTGCAAACTC TAAAAGTAGG
  TGTAAGGGGG GGAGAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936890	NES16189339	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47761529					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936890	NES16189339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260920 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	1181 bp downstream
Tssr58809	transcription start site region 58809	544 bp downstream
Tssr58810	transcription start site region 58810	519 bp downstream
Tssr58811	transcription start site region 58811	430 bp downstream
Tssr63020	transcription start site region 63020	1457 bp upstream
Tssr63021	transcription start site region 63021	1379 bp upstream
Tssr63022	transcription start site region 63022	1340 bp upstream
Tssr63023	transcription start site region 63023	1285 bp upstream
Tssr63024	transcription start site region 63024	1187 bp upstream
Tssr63025	transcription start site region 63025	1155 bp upstream
Tssr63026	transcription start site region 63026	1134 bp upstream
Tssr63027	transcription start site region 63027	1096 bp upstream
Tssr63028	transcription start site region 63028	1071 bp upstream
Tssr63029	transcription start site region 63029	1043 bp upstream
Tssr63030	transcription start site region 63030	987 bp upstream
Tssr63031	transcription start site region 63031	957 bp upstream
Tssr63032	transcription start site region 63032	926 bp upstream
Tssr63033	transcription start site region 63033	912 bp upstream
Tssr63034	transcription start site region 63034	886 bp upstream
Tssr63035	transcription start site region 63035	871 bp upstream
Tssr63036	transcription start site region 63036	804 bp upstream
Tssr63037	transcription start site region 63037	771 bp upstream
Tssr63038	transcription start site region 63038	746 bp upstream
Tssr63039	transcription start site region 63039	678 bp upstream
Tssr63040	transcription start site region 63040	634 bp upstream
Tssr63041	transcription start site region 63041	587 bp upstream
Tssr63042	transcription start site region 63042	567 bp upstream
Tssr63043	transcription start site region 63043	550 bp upstream
Tssr63044	transcription start site region 63044	515 bp upstream
Tssr63045	transcription start site region 63045	435 bp upstream
Tssr63046	transcription start site region 63046	422 bp upstream
Tssr63047	transcription start site region 63047	401 bp upstream
Tssr63048	transcription start site region 63048	367 bp upstream
Tssr63049	transcription start site region 63049	343 bp upstream
Tssr63050	transcription start site region 63050	298 bp upstream
Tssr63051	transcription start site region 63051	276 bp upstream
Tssr63052	transcription start site region 63052	1226 bp downstream
Tssr63053	transcription start site region 63053	1336 bp downstream
Tssr63054	transcription start site region 63054	1503 bp downstream
Tssr63055	transcription start site region 63055	1530 bp downstream
Tssr63056	transcription start site region 63056	1571 bp downstream
Tssr63057	transcription start site region 63057	1604 bp downstream