rs47761940 SNP Detail

Summary

• ID
  rs47761940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100854782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC AGGAAAACTG ACTGTTGGCA
  Y
  TCCTAACCTC AAACCCCTTC CTCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137997094	ENSMUSSNP5491992	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss324138829	CHEV_12_102126733	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47761940					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100854782 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	within coordinates
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	185 bp distal
Rr471363	regulatory region 471363	603 bp distal
Tssr117330	transcription start site region 117330	659 bp upstream
Tssr117331	transcription start site region 117331	636 bp upstream
Tssr117332	transcription start site region 117332	622 bp upstream
Tssr117333	transcription start site region 117333	587 bp upstream
Tssr117334	transcription start site region 117334	565 bp upstream
Tssr117335	transcription start site region 117335	486 bp upstream
Tssr117336	transcription start site region 117336	442 bp upstream