rs47762718 SNP Detail

Summary

• ID
  rs47762718
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70896825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGTCTT TCAGGTATTG
  CCTTCATAGT CATCTATCTC TCTGCCTTGC CTTGGCAACA GCATACTACT ATGTGGCTAG
  TCTTTGTAAG ACTCTTGTGG ATGAGAGATA AGAGGTAGAA AAGAAATAAA TGCCATTCTC
  TCTTGCTCTG TCAAGGAGTC AACTAATAAA ACTAGCCTGC TCATTCTTGT GTTTCATTTA
  K
  GCTGTGTGCA ATCAAGCACA CTCATCGGAC CTATGTATCT TGGTTGCAAA AAGAGATATT
  CAGCTATGGA TTTTCTAAGA GGTCATGAGG GTACAACACA GATAATACAA ACGATTGAAT
  ATCAAGTACA GATGTGACTT CATTTGTAGA TCCCGGTTGA AAGACTTGAA GTTTGTCTAT
  TTTAAGTATC TATCAGAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52652473	NES15473962	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		G	T	T	G		T
ss324416638	CHEV_13_70887584	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47762718					SNP	T	T	T	T	T	T	G	T	T	T	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652473	NES15473962	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70896825 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Rr284828	regulatory region 284828	1682 bp distal
Tssr123156	transcription start site region 123156	1376 bp downstream