rs47764204 SNP Detail

Summary

• ID
  rs47764204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80645069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCTGCC AAGAGACAAA
  GTGGGGACTT GGGATCCGCG TGCTCAGGCC TGGTCTCCTT CTCCCTTGGT GAGCAGCCCC
  ATCAGGTGAA ATCTCTGGAA GGAAGGCTTA CCGCTGGCGA CGCTTCCTTC TTTGGTGGAG
  AGCTGGGCGG GACCCATGGG TGAGGGGCAG CCACGACCTC CCCAGCCACT GCGTCTGAAA
  R
  GCAGGCAGTC TGAAGTGGAG GAATGAGCAC AGCCACCCAC CTCTTCTTTG CCCTCACCCC
  CAGAACTCCA CTGGGATACC CCAACCTCCT CCTAGAGACC TCTCTTTTTT CTCTTTGGAG
  TGGCCATTCC CCGCCCCCAG CTGCACGAGG GTTGCTAGCA ATAATAATCG TGGGGGCGAT
  CCTCTGCTCC AGGATGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61290498	NES16901539	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47764204					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290498	NES16901539	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80645069 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	1587 bp downstream
Cpgi1909	CpG island 1909	1371 bp distal
Cpgi1910	CpG island 1910	56 bp distal
Cpgi1911	CpG island 1911	924 bp proximal
Jsrp1	junctional sarcoplasmic reticulum protein 1	within coordinates
Tssr94628	transcription start site region 94628	1536 bp downstream
Tssr98516	transcription start site region 98516	1575 bp upstream