rs47764393 SNP Detail

Summary

• ID
  rs47764393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42456929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTAAGGG TGAAGTCCTG TTAGGCACGG AGAACAAAGG
  AAGCTCTTTT CTTTCTGTTT GTGTTTCTGG CTAAAGGCAG TTTTATGCCT TGTCTGCTTC
  Y
  ATTTGCGCTG CTAGATCTGA CCTGAATACT AGGGTGCAGG TGCTTGCTCT GGACGCCTGA
  AGAAAGATAT TACTACCAAT CTGACCCTCT CTTCTCTTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52629854	NES15518472	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47764393					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629854	NES15518472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42456929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	1447 bp distal
Edn1	endothelin 1	within coordinates
Gm47118	predicted gene, 47118	within coordinates
Gm60910	predicted gene, 60910	1776 bp upstream
Rr388326	regulatory region 388326	1426 bp downstream
Rr478146	regulatory region 478146	1967 bp distal
Rr478147	regulatory region 478147	799 bp distal
Rr478148	regulatory region 478148	274 bp proximal
Tssr119439	transcription start site region 119439	1962 bp downstream
Tssr119440	transcription start site region 119440	1935 bp downstream
Tssr119441	transcription start site region 119441	1827 bp downstream
Tssr119442	transcription start site region 119442	1640 bp downstream
Tssr119443	transcription start site region 119443	1619 bp downstream
Tssr119444	transcription start site region 119444	1486 bp downstream
Tssr119445	transcription start site region 119445	1574 bp upstream