rs47767880 SNP Detail

Summary

• ID
  rs47767880
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:61964274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATGTCCAT ATGCATGCTC TGGTTCACAC ATGCCTGTGA
  ACATAAGGAC ATCAACAGAG ATGTCTAGTT CCTCCTCTAC TATTCTCCTC GTGGCTTCTT
  M
  CTCAGCTTGG AGGTCATCTG GCTGCAAGTA AGCCCTGCTG CTTCTCCTAT CTCTACTTTC
  TCTATCACTG GGCTTACAGG CATGTTTGGC TCAGCTTCAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61171332	NES16678239	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47767880					SNP	A	C	C	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61171332	NES16678239	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:61964274 () rs orientation: forward

Symbol	Name	Function Class
G6pd2	glucose-6-phosphate dehydrogenase 2	1912 bp upstream
Gm73520	predicted gene, 73520	within coordinates
Tssr46354	transcription start site region 46354	216 bp downstream
Tssr46355	transcription start site region 46355	195 bp downstream
Tssr46356	transcription start site region 46356	181 bp downstream