rs47768186 SNP Detail

Summary

• ID
  rs47768186
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35018303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAAACAAT ATTGGTCTCT GTACACCCCA TCCTGGCTCT
  GCCATGCGCC TGAGTACTGG AAGGACACAG CGATAAGATG CTGGAAACCA AATATTCGGA
  S
  GCAGGGCAGA GTCTCTGTAA TTCCGTACAG CCAGTCCTGC GACTGGCTCC TTCGCCCCTG
  CTTAATTGCC TCAGCCAGCA ATAAGTGCCA ACCCGATCTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60993438	NES16128327	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	G	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47768186					SNP	C	C	C	C	G	G	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993438	NES16128327	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35018303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	274 bp distal
Gpatch1	G patch domain containing 1	438 bp upstream
Tssr72030	transcription start site region 72030	441 bp upstream