rs47768613 SNP Detail

Summary

• ID
  rs47768613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124142320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGTCAC CTCAAAGGTT
  CCATCTCAGA AGTCAGCCCA CCCCCATCAC TGACCACGAT TTCCCTCCCT GGTTCCACTC
  TAAGTACCCA AGCAGAAGAT CCAGTAGGTC CAAGTTCATA AAGACTCAGA ATTCGGCTGT
  TCAGCTGGGA AGTCCCAGGG AGTGAGCGTG ATGAAGTCCA TCACTATTCA ATAAAGCTTG
  Y
  TTTCAATAAG CCACCGAGAA AGCCCAACGT GCTCGCTAGG AGTCAAGCCA GCGACTGCGG
  CGGAGGAGAC GATCAGATTC TTTTTCAAGG TGAATGGATT TCTCAGGACA AGCCTCCCTC
  TTCCTAATAT GGCCGCCTAA TAGCATCTCC TGTGTGTAGG CATAGGGTTG CATCGGAGGA
  CGGGACAGCT TAGATCGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835805	NES16016884	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47768613					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835805	NES16016884	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124142320 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	391 bp upstream
Hip1r	huntingtin interacting protein 1 related	1057 bp downstream
Tssr48832	transcription start site region 48832	731 bp upstream
Tssr53284	transcription start site region 53284	1360 bp downstream
Tssr53285	transcription start site region 53285	1858 bp downstream
Vps37b	vacuolar protein sorting 37B	384 bp downstream