rs47769259 SNP Detail

Summary

• ID
  rs47769259
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104698330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCCTCCC CCACAGCCTT
  CGCTTCATCT CTACTCTGTC TGGCATGATC CTTGCCAGGC TGTGTAGGTC TGGAGACCTC
  ACTGACCCGG TCAGCTCCCT GTGGTCTGAA CTGCTCGTTC ACGTGTGCTG GGGTGTAGGA
  CACATATAAA CTCTGAGAAG CTGACTCCTT CCTTATCTTG AGTCACAGGG AGGTGTCTGC
  W
  GGGCCTAAGG GTCAGCTGGT CACAAGGAGG AAGGGGCTGT TCCAGAGAGT GGGTGGAGGT
  GATTCCCGAG TGGGTTTAGC TCCGTCACAG CAATGCTGTG ATAGATGTGT GGCTCCCCAC
  AGTGTGGTCA TTGTCCCCTG TCAGGGGCTG AGTGACCCAG TGTTGCTGCC AGGCCCAGAA
  AAGGGGATGG GTGGTGGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60431841	NES15936381	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs47769259					SNP	T	T	T	T	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431841	NES15936381	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104698330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	1317 bp distal
Gm66976	predicted gene, 66976	within coordinates
Rhoc	ras homolog family member C	within coordinates
Rr77009	regulatory region 77009	within coordinates
Tssr31059	transcription start site region 31059	1968 bp downstream
Tssr34890	transcription start site region 34890	1031 bp downstream