rs47769496 SNP Detail

Summary

• ID
  rs47769496
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28946674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGGGATC TACAATTCTT
  AGCCTCTCTT CTGGCCTTTG CCTCTGCAAA GGTTTGCTCA CAGGGCTTGG GGGAGGTAGC
  TATTCAAAAG ACCCTTCTAG GAACACAAAC TGGAGGCCAC AGAGGGGCAG GGACTCATCC
  CGAGCTGCCT GGCACTTACG GGACCCCCAC TTTACCCTTA CCACCCAGAT CCGGACACTG
  M
  GGCTCAAGAT CCTGGCCCAG GCAGCGGCCG AAGGAGTGCC AGTGCGTGGG GCGCGGAACC
  AGCTGCGCAT GTACCTGACT ATGGCAGTGG CAGCTGCGCA GCCGGTACTC ATGTACTGGC
  TCACCTTCCA CCTTGTACGG TGAGCTGCGG CCTGGCCTCC AGCTCCCACA CTCATCTCGC
  TTGACCAGGG CTCCCGCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60986967	NES16139379	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47769496					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60986967	NES16139379	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28946674 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	272 bp downstream
Cpgi18753	CpG island 18753	within coordinates
Gm73451	predicted gene, 73451	366 bp upstream
Rr644522	regulatory region 644522	1933 bp distal
Rr644523	regulatory region 644523	within coordinates
Rr644524	regulatory region 644524	295 bp proximal
Rr644525	regulatory region 644525	1207 bp proximal
Tssr65617	transcription start site region 65617	1499 bp downstream
Tssr65618	transcription start site region 65618	386 bp upstream
Tssr71635	transcription start site region 71635	111 bp upstream
Tssr71636	transcription start site region 71636	477 bp downstream
Tssr71637	transcription start site region 71637	677 bp downstream
Tssr71638	transcription start site region 71638	695 bp downstream
Tssr71639	transcription start site region 71639	1126 bp downstream
Tssr71640	transcription start site region 71640	1208 bp downstream
Tssr71641	transcription start site region 71641	1262 bp downstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	within coordinates