rs47769729 SNP Detail

Summary

• ID
  rs47769729
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70407139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAACCTGGAC ATTTGAAGAA AATGTGACCA TTTGGTACCT
  AACAATGAAC TAAACATTTG CCTGGGTTGT AGTGATGCAT GCTTGTAGTT CCAGCACTTA
  G
  CAGATGGAGG AAGATTATAG CATGTTTGAA GTCAGCTTGG TATACACAGT GAGTTCTAGG
  CCAATGAGGG TTACATAGTG AGACCCTGTC AAAAATAAAT A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss134200930	ENSMUSSNP2222793	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47769729					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70407139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22755	CpG island 22755	999 bp proximal
Mtmr1	myotubularin related protein 1	1227 bp upstream
Rr691755	regulatory region 691755	1429 bp distal
Rr691756	regulatory region 691756	929 bp proximal
Rr691757	regulatory region 691757	1236 bp proximal
Rr691758	regulatory region 691758	1297 bp proximal
Tssr161163	transcription start site region 161163	1212 bp upstream
Tssr161164	transcription start site region 161164	1368 bp upstream