rs47769954 SNP Detail

Summary

• ID
  rs47769954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30093245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCATCCC CTCTACCTTA
  CTTTTGAGGC AGGATCTTTC CACTGAGGTG GGAGCTCACT GTTTTGGGTA GACAGGCTGG
  TCAGTGAGCC TGTGGGTTCT GCTTGTCTCT GTCTCTCTAG TGCCAGGGCT ACAGGCACAC
  ATGCCACCCC CAGCTTTTTA CACTGGCACT GGGGATCCAA ACTCAGAACC TGACACTACC
  R
  CAGCCCACAT CTCCCTGATC TCTACAGAGC TGCCTCCCTC TCTTCCTTCA TCTCAGATGT
  GCCTTTGCGT TGCTAACCAA GGCTCGGCTT CCCCGCTGCT GTTCACATAG GCATCGCCCA
  TGTTTCTCAT CTGTTTTGTT TTATTTTTGG GTCAGAGTTT CATATAGCCC AGGCTGGCCT
  TTGTAGCTGA AGATAGCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60991171	NES16138923	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47769954					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991171	NES16138923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30093245 () rs orientation: forward

Symbol	Name	Function Class
Gm42376	predicted gene, 42376	within coordinates
Rr155978	regulatory region 155978	1445 bp distal
Rr155979	regulatory region 155979	1156 bp proximal
Tssr2182	transcription start site region 2182	550 bp downstream
Tssr2183	transcription start site region 2183	1006 bp upstream
Tssr71732	transcription start site region 71732	488 bp downstream
Tssr71733	transcription start site region 71733	610 bp downstream
Tssr71734	transcription start site region 71734	702 bp downstream
Tssr71735	transcription start site region 71735	744 bp downstream