rs47770218 SNP Detail

Summary

• ID
  rs47770218
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTATGCACAA AGCATAATGT ATAATTTAAA TGAAAACTAG
  TACTCTTATA CACCCGTGGC TCTTGAGGAG TTTGTCGTGC ATAAGGCACA TCCAAAAAAC
  W
  TTCCTTTGCA AAAAACAAAG GCTAGGTAGA AGAATTGGAA TGTACCGGTA AAGGTACTGG
  CCATGATCTT ACTATGGCCC ATAAAGGTAT ACTTATCCTG G                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136943667	ENSMUSSNP3609910	ENSEMBL	ENSEMBL_Sanger	r	SNP	T
ss138991210	ENSMUSSNP5831555	ENSEMBL	ENSEMBL_Sanger	r	SNP	T		A
ss139867077	ENSMUSSNP2505489	ENSEMBL	ENSEMBL_Sanger	r	SNP			T
ss146021727	ENSMUSSNP5932583	ENSEMBL	ENSEMBL_Sanger	r	SNP	A
ss146766975	ENSMUSSNP4060084	ENSEMBL	ENSEMBL_Sanger	r	SNP			T
ss147390514	ENSMUSSNP2315748	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss147933067	ENSMUSSNP2170777	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss148920987	ENSMUSSNP2741021	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47770218					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992485 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2			Intron
				Noncoding-Transcript-Variant
Gm69636	predicted gene, 69636			within coordinates