rs47770429 SNP Detail

Summary

• ID
  rs47770429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37229017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAGTAT GGCATGCTTC
  ACTCAAATCA AAGAATTCTT AAGCAAGTAT GCCCAATTGT GGTGAAAGGC TATTATACAC
  ACCAGCCACA TTCTGGACAT GTGGGTATAT TCTGGAAATT CATGAAAACT TCCCAGTCAC
  AGTCAGTATT CATGGTGATG GACTTAATTA AAATGAAAGG GCTGATGTGG TTTTTTTTTC
  Y
  CTCTCCTTTT CTGATCTGCT CAGTTAGATT TACATGGCGA GTTTTCTAAA TGAAAAGCTA
  TCATTGAAGG CAGTGAGAAT GGAGAGCTGG GCATAAGGCT CTGGGATCCT GGAGTCAGAG
  CCAGCCTAAG TGGAGATGAA AGTGCTCTCG GGTCCACTAG TGGCCACTGG GTGAAGTGCA
  GGACTACTTG GACCAATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61768041	NES17688995	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs47770429					SNP	T	T	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61768041	NES17688995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37229017 () rs orientation: forward

Symbol	Name	Function Class
F13a1	coagulation factor XIII, A1 subunit	within coordinates
Rr271551	regulatory region 271551	within coordinates
Rr279043	regulatory region 279043	80 bp proximal
Rr283270	regulatory region 283270	584 bp proximal