rs47771146 SNP Detail

Summary

• ID
  rs47771146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191573009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCACACAT ACAGACTTGG
  GCTCCATCTC CCAAGCCTGT GCAGCATGGC TTACAACTGG TGGCTGCTTG GAGCAGGCCC
  CTTTTCAGGC TCTGCCTGGG GCTAATCTGG AGACAGGTGG GGATGGCTTG CTGCAAACCA
  GCTAAAGTGA CAGTGTTACC ATTCCAGGGC TCGAGGAAAC TGTGAGAGTC CAAAGTCTCC
  R
  GTGTCACGAG CCCTGATGTC AAAGATTCCC TCAGCCAGAG CCCAGCTTCC CAGAAACCTC
  CCAAACAATC AGCGATAGGC AAATTAGCTA CAAGAAGCTG CCTGGCAGCC AGCTTGGGGC
  TGGATGCCAG GCCTGAGTGG AATGGACCCA GGAGACTTCT GCCCCCGGTG GCCTATGAGG
  TCAGCTCCTC TCCTCAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360482	NES15857353	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47771146					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360482	NES15857353	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191573009 () rs orientation: forward

Symbol	Name	Function Class
Rr426235	regulatory region 426235	760 bp distal
Rr426236	regulatory region 426236	853 bp distal
Rr426237	regulatory region 426237	within coordinates