rs47771362 SNP Detail

Summary

• ID
  rs47771362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135778337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCTGGTAA GGCACCTAGG CCCCTTCCTT GACCCTGCCT
  CATTTTCTCG GGGGCCGGGA TCCAGAAGCT AATGATGTGT CATGCTGCTA AAGCAATAGG
  R
  GAGGAACCCA GTTTTCTGCA GATCTGGCCC TACTCCCCAG GGTATTGGGA GGGTCAGGGG
  ACGGGGAGGA ACCATCTCTA GCCAAGTGTC CCTGCTCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145548377	ENSMUSSNP5146506	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47771362					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135778337 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	64 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	1154 bp upstream
Tssr9020	transcription start site region 9020	1751 bp downstream
Tssr9021	transcription start site region 9021	1731 bp downstream
Tssr9022	transcription start site region 9022	1243 bp downstream
Tssr9023	transcription start site region 9023	1169 bp downstream
Tssr9024	transcription start site region 9024	1133 bp downstream
Tssr9025	transcription start site region 9025	843 bp downstream
Tssr9026	transcription start site region 9026	645 bp downstream
Tssr9027	transcription start site region 9027	527 bp downstream
Tssr9028	transcription start site region 9028	489 bp downstream
Tssr9029	transcription start site region 9029	78 bp upstream
Tssr9030	transcription start site region 9030	113 bp upstream
Tssr9031	transcription start site region 9031	172 bp upstream
Tssr9032	transcription start site region 9032	755 bp upstream
Tssr9033	transcription start site region 9033	1600 bp upstream
Tssr13894	transcription start site region 13894	1746 bp upstream
Tssr13895	transcription start site region 13895	1702 bp upstream
Tssr13896	transcription start site region 13896	1175 bp upstream
Tssr13897	transcription start site region 13897	1147 bp upstream
Tssr13898	transcription start site region 13898	138 bp downstream
Tssr13899	transcription start site region 13899	206 bp downstream
Tssr13900	transcription start site region 13900	216 bp downstream
Tssr13901	transcription start site region 13901	777 bp downstream
Tssr13902	transcription start site region 13902	1638 bp downstream