rs47772235 SNP Detail

Summary

• ID
  rs47772235
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20791290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGTTACG CCAAAGCCAA
  TCTTACTGTG AATTAATAAG TTCCCAACAG AGCACAACAG AGATTTCTTC TTAAGTCAGC
  TCCCCTACAA ATGTCATATG GATCGTAAGC TCTAAGGGCT GGGAGGGATG ACAGAACCCC
  ATGCAGTGCA GCTAAGCCAC TCTGAACTGG CAGCCAAGAT CTAGATACAT GCAGGTGACT
  K
  CTCTTTGTGG CTGTCAAGAT GGTCAATTAC AGGTTGGCCT GGGCTCCAGT GACATGGTCC
  AGAGCACTCC ATAAATTGCA AAATCCATAG TCATTCACAG GGGTCATTCT TTCCACTAGA
  GTGCCCACAT CGGAGTGTTA GGCTGACATT TCCTCCATCC TTAAGCTTGG ATCTTATTAA
  CATGCATGCC CTTCCTGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61757672	NES17682600	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47772235					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757672	NES17682600	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20791290 () rs orientation: forward

Symbol	Name	Function Class
Elmo1	engulfment and cell motility 1	within coordinates
Gm60937	predicted gene, 60937	985 bp downstream
Rr475587	regulatory region 475587	1956 bp proximal
Tssr118599	transcription start site region 118599	1706 bp downstream
Tssr118600	transcription start site region 118600	1659 bp downstream