rs47772253 SNP Detail

Summary

• ID
  rs47772253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100895008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTGAGA GAGGGTCTCA
  CTATGTAACC ACAACTGGCT GGCCTGTCTC CTGGATATGT AGACCAGGTT GGCCTCAAAT
  TCAGAGAACT GCTCCTTAAT AAAAATTAAA AAGCCCATTT TTCTTCCATG CTTCAGAAAC
  TTAGAATTCC TCTACTGTAG AAAAAGTCCA TTTTGGGGGG CTCGAGAGAT GCCTGAGTAG
  Y
  TAAGAGCATT GGCTTCTCTC GAAGAGGACT GGTTCCCAGC ACATGAACGC TTACAGCTGT
  CTGAAACTAT CGTTCCAGGG AACCTGACAC CCTCTTTTGG GCTCTGTAGC CTATTGCATA
  CACATGGAAT ATACAAACTC ATCTACATAC ACACACAAAA AACTTTTTCT TCAAAATGAT
  GTTTTCTGTG TAGCCCTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52685846	NES15521446	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47772253					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685846	NES15521446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100895008 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	1174 bp downstream
Rr269996	regulatory region 269996	1408 bp distal