rs47773825 SNP Detail

Summary

• ID
  rs47773825
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155092943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCAACCAC ATCAAAGGAA TAGCTGAGAC CCGGCAAGCA
  CAGACAGTTT CCCTCTGCCC CTCTGGAAGA GCCCTGCTGG CTGGGATTTC TAGATGTCAC
  G
  GGACAACAGG GGGGCAGTGG AGTCAAATCG GCCAGCTCTA CCCCCTCAGC ATGAGGGCTC
  CTGGGACCTG GCACCTAGGA AGAGCTTCCG AGGAATGAG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145777629	ENSMUSSNP1082991	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47773825					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155092943 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr420975	regulatory region 420975			within coordinates
Rr420976	regulatory region 420976			1625 bp distal
Rr420977	regulatory region 420977			844 bp proximal
Rr420978	regulatory region 420978			1181 bp proximal
Rr420979	regulatory region 420979			1837 bp proximal