rs47774172 SNP Detail

Summary

• ID
  rs47774172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCCTAA ATAAGGCCTA
  TCATACTCTT GAGTGTGAGT CTCAGTACCT CAAATCCCAG ACACAAAAGC CTCTAAGGTC
  ACAAGTATCC CCTCAGCACC TGTCACAACA CACCCCCTAG CTGGTGTTAC ATACTTGGCT
  TCTGGAGATT TGAAGTTGAA TGGCACACAC TAGAAGGCTT GGAGAGCAGC AAGCAAAAGA
  Y
  ACTTTTCATT AAGGGCAACC GTCTGTGGCT TATTAATCAC TCATGTTCCA AGCCAACATT
  TATCTTGCAC CTTTGTAACA ATCAAACCTA TCTTCTTTGG AAGCCTAGTT AACCCAGTTA
  TTTCCTGCGC AAATGTCTCC TGTATCGTTA ACTCTTAATT CACACAACCT CCAGAAACAG
  GACACAGTCT TATTACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60445534	NES15941775	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	T	T		C	T	T	C		T
ss135766555	ENSMUSSNP6147606	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss320920390	CHEV_3_123210280	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47774172					SNP	T	T	C	T	C	T	C	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445534	NES15941775	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	576 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	765 bp downstream
Rr397991	regulatory region 397991	328 bp downstream
Rr584523	regulatory region 584523	443 bp distal
Rr584524	regulatory region 584524	308 bp distal
Rr584525	regulatory region 584525	1012 bp proximal
Rr584526	regulatory region 584526	1557 bp proximal
Rr584527	regulatory region 584527	1948 bp proximal
Snhg8	small nucleolar RNA host gene 8	190 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	575 bp downstream
Tssr31551	transcription start site region 31551	1188 bp upstream
Tssr31552	transcription start site region 31552	1226 bp upstream
Tssr35502	transcription start site region 35502	968 bp downstream
Tssr35503	transcription start site region 35503	1553 bp downstream