rs47776013 SNP Detail

Summary

• ID
  rs47776013
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17461613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCAGCAT TAACTTCTTC
  CACGGTGATC GAATGGCTAG CTCTCCTTTA TACACTACTT CTGAACTCAG CTGCATCTTC
  TCTTTTAAGC AAGAAACGAA ACCCCTTTCT AAAGGCACCA TCAGATTTCA CCTTGGACTT
  CACTGCCAGC GTGACAGACA TCACGCGGCT ATCACTGGTT GCAAGGGATT CTGGGAGAAA
  R
  TTTTTCAAGA CTGAGAAGGG AAGTCAGGGG AGGGAGATCT GCTTGGAAAC AGGTGCTGGC
  TTAGCCAGGC AACAGTATTA GCCACAGAGG TTTGGTTGGT CAGGAAAATA CCAGTAGAAC
  TTCATCATCC AATGTGTCAC CCATGCCACA GACGCTAAGA AAGTCAAAGA GCAATTAAAG
  TTGGCTGCAA AAGCTTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014939	ENSMUSSNP6377692	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47776013					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17461613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	1701 bp proximal
Rr626799	regulatory region 626799	1696 bp proximal
Rr626800	regulatory region 626800	1860 bp proximal
Rr626801	regulatory region 626801	1903 bp proximal
Tssr55050	transcription start site region 55050	1818 bp upstream
Tssr55051	transcription start site region 55051	1941 bp upstream
Tssr59906	transcription start site region 59906	1985 bp upstream