rs47777137 SNP Detail

Summary

• ID
  rs47777137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCTCCCTC TGGCGGCAAG CAGAGCTTCA
  TCTCTTTCTC CAGGAACCTC AGCTCCTAGA TGCACTCAGA GAACCAAAAC AAAGTCAAaa
  caacaacaac aacaacaaca gcaTGTTCCC ACAGACACTT CATTTGGTAA TTTGGGGTTT
  Y
  TCACTAAACC ACAAGATCCT CAGAGCTCAC TAGCAATGGG CAAGCCTATT CTGAAGTAAC
  TTGCATGGAA GACAATTCCT TGGgactcag caggtaaaaa tgcttgtaga caacctggct
  acctgagttc aatctctagg acccatgtgg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60803592	NES16473456	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T		C	T		T
ss319993384	CHEV_1_137685675	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47777137					SNP	T	C	C	C	C	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803592	NES16473456	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716836 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	805 bp distal
Rr419277	regulatory region 419277	1098 bp distal
Rr419278	regulatory region 419278	within coordinates
Rr419279	regulatory region 419279	130 bp distal
Rr419280	regulatory region 419280	636 bp proximal
Rr419281	regulatory region 419281	907 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron