rs47778309 SNP Detail

Summary

• ID
  rs47778309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5935802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCACCCA TCGCTTTGCG TGTCACTGTC TCGCATTCCA
  CTTCACAGAA TTACACATAG TCACCAGGGC CTTCAGGATT CAGTACCTGG GGAGCAACTG
  R
  ATTTAGCTGA ACTGAAAAAT GCAACAGGCA TCTCAAGGAG CAACAACAAA GCAGCAGGTT
  GCTCCCCAGC CTGGAGCTGG GCCAGCAGGC CGGGCTCTGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60525985	NES16545872	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47778309					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525985	NES16545872	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5935802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8563	CpG island 8563	1477 bp proximal
Rr332307	regulatory region 332307	within coordinates
Rr332309	regulatory region 332309	1999 bp proximal
Rr342320	regulatory region 342320	within coordinates
Rr370166	regulatory region 370166	72 bp upstream
Snx9	sorting nexin 9	within coordinates