rs47778471 SNP Detail

Summary

• ID
  rs47778471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACAAGGC TACACCTCCT
  CCAACAAGGG CACACCTCCT ACTAGTGCCA CTCCCTGGAC CAAGCATATA CAAACCAGCC
  CAGTATCTTA ATCATTATCT ATATTGTATA CCACAGCTTC TCTCTGAATT ATGTCTTATT
  TAATTTTACA TAAACTCTAT AAACTTAAAC TGGATATTTA TAAACACCGA AAGAAAACTG
  R
  TCTTATCATC TATTTCCAGC AAATTGTGCA TAATTCTGAT TAAGGAATTT AGCTTAGGCT
  TTTGCATGTT GTAAGTTTAC TTTTGCAATC GTGGGCAAGG CAGAGTAGGG GCCAACTATT
  GGCCTGGGAA CTAGGAAGTG ATAGCAAGAG GGAGGAAGAA GCTGGGGTCC CATCATCCTT
  TGCAAGGGCA CAAGCCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135864405	ENSMUSSNP1019480	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320954474	CHEV_3_127182003	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47778471					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272734 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1094 bp downstream
Gm43355	predicted gene 43355	350 bp downstream