rs47778628 SNP Detail

Summary

• ID
  rs47778628
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:98305881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT GATCTGTTGG GGGGAGGGGG
  A
  GAATTTAAAG AAATATTTAG TCTTT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136837876	ENSMUSSNP2561986	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs47778628					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98305881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	836 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	234 bp distal
Rbp1	retinol binding protein 1, cellular	mRNA-UTR
Rr685255	regulatory region 685255	1466 bp distal
Rr685256	regulatory region 685256	857 bp distal
Rr685257	regulatory region 685257	699 bp distal
Tssr2984	transcription start site region 2984	1255 bp upstream
Tssr86646	transcription start site region 86646	951 bp upstream
Tssr86647	transcription start site region 86647	1034 bp upstream
Tssr86648	transcription start site region 86648	1094 bp upstream
Tssr86649	transcription start site region 86649	1131 bp upstream
Tssr86650	transcription start site region 86650	1478 bp upstream
Tssr86651	transcription start site region 86651	1660 bp upstream