rs47779888 SNP Detail

Summary

• ID
  rs47779888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172344324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAGT AATTCCCACC GATTTCGTGG
  Y
  TCGCTTTTGC TCTTTCCACT CCGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011717	PARCsnp_1.19937	PARC_SEQ	INBRED	f	SNP	T	C
ss120014616	PARCsnp_1.09985	PARC_SEQ	INBRED	f	SNP	T	C
ss146194102	ENSMUSSNP6786654	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320125819	CHEV_1_174446888	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs47779888					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172344324 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	1910 bp downstream
Gm70635	predicted gene, 70635	within coordinates
Rr372460	regulatory region 372460	1323 bp upstream
Rr423606	regulatory region 423606	715 bp distal
Rr423607	regulatory region 423607	1448 bp proximal