rs47779897 SNP Detail

Summary

• ID
  rs47779897
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99868636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGAATAGAGT AAAACAGCAC TCACTTCACA TGAAGACTCC
  CAAGTGGAAA GAGCTAAACA AAAGGATGCA CCACAGAGTT CAGCTCCAGC CCCTGCTCCC
  W
  GGGACTTGCC GCCAGCACTG GCCTTTTGGC AGCTATGAAA CACCAGCCTT TCCTTATCAA
  AATACAAAGA AGGGGAGGGG GGAAATCATC TAACAGTTTC T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148920112	ENSMUSSNP2627386	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs47779897					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99868636 () rs orientation: forward

Symbol	Name	Function Class
A930011G23Rik	RIKEN cDNA A930011G23 gene	within coordinates
Gm73153	predicted gene, 73153	within coordinates
Rr119571	regulatory region 119571	165 bp proximal
Tssr52054	transcription start site region 52054	1205 bp downstream