rs47779969 SNP Detail

Summary

• ID
  rs47779969
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28851342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG CCTCCTTTCG GCCTTGAGGT
  G
  AGAAACTCCA CCACCATGCA CTGTA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss137506910	ENSMUSSNP5328435	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323973127	CHEV_12_29486208	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47779969					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28851342 () rs orientation: forward

Symbol	Name	Function Class
Eipr1	EARP complex and GARP complex interacting protein 1	within coordinates
Rr464343	regulatory region 464343	545 bp distal
Rr464344	regulatory region 464344	1599 bp proximal
Tssr3815	transcription start site region 3815	634 bp downstream
Tssr113054	transcription start site region 113054	878 bp upstream